Wrapper around SPM's registration class. More...
#include "SPMRegistration.h"
Inheritance diagram for sirf::SPMRegistration< dataType >:
Public Member Functions | |
| virtual | ~SPMRegistration () |
| Destructor. | |
| void | process () |
| Process. | |
| void | set_working_folder (const std::string &working_folder) |
| Set working folder. | |
| void | set_working_folder_file_overwrite (const bool working_folder_overwrite) |
| Set file overwrite in working folder. | |
| void | set_delete_temp_files (const bool delete_temp_files) |
| Delete temporary files. | |
| virtual const std::shared_ptr< const ImageData > | get_output_sptr (const unsigned idx=0) const |
| Get registered image. | |
| virtual const std::shared_ptr< const AffineTransformation< float > > | get_transformation_matrix_forward_sptr (const unsigned idx=0) const |
| Get forwards transformation matrix. | |
| virtual const std::shared_ptr< const AffineTransformation< float > > | get_transformation_matrix_inverse_sptr (const unsigned idx=0) const |
| Get inverse transformation matrix. | |
| virtual const std::shared_ptr< const Transformation< dataType > > | get_deformation_field_forward_sptr (const unsigned idx=0) const |
| Get forward deformation field image. | |
| virtual const std::shared_ptr< const Transformation< dataType > > | get_deformation_field_inverse_sptr (const unsigned idx=0) const |
| Get inverse deformation field image. | |
 Public Member Functions inherited from sirf::NiftiBasedRegistration< dataType > | |
| NiftiBasedRegistration () | |
| Constructor. | |
| virtual | ~NiftiBasedRegistration () |
| Destructor. | |
| virtual const std::shared_ptr< const Transformation< dataType > > | get_displacement_field_forward_sptr (const unsigned idx=0) const |
| Get forward displacement field image. | |
| virtual const std::shared_ptr< const Transformation< dataType > > | get_displacement_field_inverse_sptr (const unsigned idx=0) const |
| Get inverse displacement field image. | |
| Public Member Functions inherited from sirf::Registration< dataType > | |
| Registration () | |
| Constructor. | |
| virtual | ~Registration () |
| Destructor. | |
| void | set_reference_image (const std::shared_ptr< const ImageData > reference_image_sptr) |
| Set reference image. | |
| void | set_floating_image (const std::shared_ptr< const ImageData > floating_image_sptr) |
| Set floating image. Will clear any previous floating images. | |
| void | add_floating_image (const std::shared_ptr< const ImageData > floating_image_sptr) |
| Add floating image. | |
| void | set_reference_image_filename (const std::string &filename) |
| Set reference image filename. Will be read as NiftiImageData. | |
| void | set_floating_image_filename (const std::string &filename) |
| Set floating image filename. Will be read as NiftiImageData. | |
| void | add_floating_image_filename (const std::string &filename) |
| Add floating image filename. Will be read as NiftiImageData. | |
| void | clear_floating_images () |
| Clear floating images. | |
Protected Member Functions | |
| virtual void | parse_parameter_file () |
| Parse parameter file. | |
| virtual void | check_parameters () const |
| Check parameters. | |
| virtual void | set_parameters () |
| Set any extra parameters. | |
Protected Attributes | |
| std::string | _working_folder = "" |
| working folder | |
| bool | _working_folder_overwrite = false |
| Overwrite files already in working folder. | |
| bool | _delete_temp_files = false |
| Delete temp files. | |
| std::vector< std::shared_ptr< AffineTransformation< float > > > | _TMs_fwd |
| Forwards transformation matrix. | |
| std::vector< std::shared_ptr< AffineTransformation< float > > > | _TMs_inv |
| Inverse transformation matrix. | |
| std::unique_ptr< matlab::engine::MATLABEngine > | _matlab_uptr |
| Matlab instance. | |
| std::vector< std::string > | _filenames_to_delete |
| Filenames to potentially delete. | |
| std::vector< std::string > | _folders_to_delete |
| Folders to potentially delete. | |
| std::vector< std::string > | _resliced_filenames |
| Resliced images. | |
| Protected Attributes inherited from sirf::NiftiBasedRegistration< dataType > | |
| std::shared_ptr< const NiftiImageData3D< dataType > > | _reference_image_nifti_sptr |
| Reference image (as NiftiImageData3D) | |
| std::vector< std::shared_ptr< const NiftiImageData3D< dataType > > > | _floating_images_nifti |
| Floating image (as NiftiImageData3D) | |
| std::vector< std::shared_ptr< NiftiImageData3D< dataType > > > | _warped_images_nifti |
| Output (as NiftiImageData3D) | |
| Protected Attributes inherited from sirf::Registration< dataType > | |
| std::shared_ptr< const ImageData > | _reference_image_sptr |
| Reference image. | |
| std::vector< std::shared_ptr< const ImageData > > | _floating_images |
| Floating image. | |
| std::vector< std::shared_ptr< ImageData > > | _warped_images |
| Warped image. | |
| std::vector< std::shared_ptr< Transformation< dataType > > > | _def_fwd_images |
| Forward deformation field image. | |
| std::string | _reference_image_filename = "" |
| Reference image filename. | |
| std::vector< std::string > | _floating_image_filenames |
| Floating image filenames. | |
Additional Inherited Members | |
| Static Public Member Functions inherited from sirf::NiftiBasedRegistration< dataType > | |
| static void | convert_to_NiftiImageData_if_not_already (std::shared_ptr< const NiftiImageData3D< dataType > > &output_sptr, const std::shared_ptr< const ImageData > &input_sptr) |
| Convert an ImageData to NiftiImageData. Try to dynamic pointer cast, else create new image. | |
Detailed Description
template<class dataType>
class sirf::SPMRegistration< dataType >
Wrapper around SPM's registration class.
The documentation for this class was generated from the following files:
- /home/sirfuser/devel/buildVM/sources/SIRF/src/Registration/cReg/include/sirf/Reg/SPMRegistration.h
- /home/sirfuser/devel/buildVM/sources/SIRF/src/Registration/cReg/SPMRegistration.cpp
