Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 123456]

Csirf::AcquisitionsInfo
►Csirf::aGadget	Abstract base class for a gadget xml-definition generator
►Csirf::Gadget	Class for a gadget xml-definition generator
Csirf::AcquisitionAccumulateTriggerGadget	Class for the generator of xml definition of AcquisitionAccumulateTriggerGadget
Csirf::AcquisitionFinishGadget	Class for the generator of xml definition of AcquisitionFinishGadget
Csirf::AsymmetricEchoAdjustROGadget	Class for the generator of xml definition of AsymmetricEchoAdjustROGadget
Csirf::AutoScaleGadget	Class for the generator of xml definition of AutoScaleGadget
Csirf::BucketToBufferGadget	Class for the generator of xml definition of BucketToBufferGadget
Csirf::CoilReductionGadget	Class for the generator of xml definition of CoilReductionGadget
Csirf::CombineGadget	Class for the generator of xml definition of CombineGadget
Csirf::ComplexToFloatGadget	Class for the generator of xml definition of ComplexToFloatGadget
Csirf::DicomFinishGadget	Class for the generator of xml definition of DicomFinishGadget
Csirf::ExtractGadget	Class for the generator of xml definition of ExtractGadget
Csirf::FFTGadget	Class for the generator of xml definition of FFTGadget
Csirf::FatWaterGadget	Class for the generator of xml definition of FatWaterGadget
►Csirf::FloatToFixPointGadget	Class for the generator of xml definition of FloatToFixPointGadget
Csirf::FloatToShortGadget	Class for the generator of xml definition of FloatToShortGadget
Csirf::FloatToUShortGadget	Class for the generator of xml definition of FloatToUShortGadget
►Csirf::GPURadialPrepGadget	Class for the generator of xml definition of GPURadialPrepGadget
Csirf::GPURadialSensePrepGadget	Class for the generator of xml definition of GPURadialSensePrepGadget
►Csirf::GPUSenseGadget	Class for the generator of xml definition of GPUSenseGadget
Csirf::GPUCGSenseGadget	Class for the generator of xml definition of GPUCGSenseGadget
Csirf::GenericReconCartesianFFTGadget	Class for the generator of xml definition of GenericReconCartesianFFTGadget
Csirf::GenericReconCartesianGrappaGadget	Class for the generator of xml definition of GenericReconCartesianGrappaGadget
Csirf::GenericReconCartesianReferencePrepGadget	Class for the generator of xml definition of GenericReconCartesianReferencePrepGadget
Csirf::GenericReconEigenChannelGadget	Class for the generator of xml definition of GenericReconEigenChannelGadget
Csirf::GenericReconFieldOfViewAdjustmentGadget	Class for the generator of xml definition of GenericReconFieldOfViewAdjustmentGadget
Csirf::GenericReconImageArrayScalingGadget	Class for the generator of xml definition of GenericReconImageArrayScalingGadget
Csirf::GenericReconKSpaceFilteringGadget	Class for the generator of xml definition of GenericReconKSpaceFilteringGadget
Csirf::GenericReconPartialFourierHandlingFilterGadget	Class for the generator of xml definition of GenericReconPartialFourierHandlingFilterGadget
Csirf::ImageArraySplitGadget	Class for the generator of xml definition of ImageArraySplitGadget
Csirf::ImageFinishGadget	Class for the generator of xml definition of ImageFinishGadget
Csirf::NoiseAdjustGadget	Class for the generator of xml definition of NoiseAdjustGadget
Csirf::PCACoilGadget	Class for the generator of xml definition of PCACoilGadget
Csirf::PhysioInterpolationGadget	Class for the generator of xml definition of PhysioInterpolationGadget
Csirf::RemoveROOversamplingGadget	Class for the generator of xml definition of RemoveROOversamplingGadget
Csirf::SimpleReconGadget	Class for the generator of xml definition of SimpleReconGadget
►Csirf::ImageMessageWriter	Base class for generators of xml-definitions of image writer gadgets
Csirf::DicomImageMessageWriter	Class for DicomImageWriter gadget xml-definition generator
Csirf::IsmrmrdImgMsgWriter	Class for MRIImageWriter gadget xml-definition generator
Csirf::IsmrmrdAcqMsgReader	Class for GadgetIsmrmrdAcquisitionMessageReader gadget xml-definition generator
Csirf::IsmrmrdAcqMsgWriter	Class for GadgetIsmrmrdAcquisitionMessageWriter gadget xml-definition generator
Csirf::IsmrmrdImgMsgReader	Class for MRIImageReader gadget xml-definition generator
Csirf::SimpleReconGadgetSet	Class for xml-definition generator for a simple fully sumpled reconstruction gadget set
►Csirf::ANumRef
Csirf::FloatRef
Csirf::NumRef
►CaTextWriter
CmexTextPrinter
CmexTextPrinter
►Cstir::Box3D
Csirf::xSTIR_Box3D	Accessor classes
Csirf::CartesianTrajectoryPrep	Class to get cartesian encoding phase encoding locations
Csirf::detail::ComplexNiftiImageData< dataType >	This is an internal class requied by NiftyResampler to handle complex images
►Csirf::ContainerBase	Abstract data container
►Csirf::DataContainer	Abstract data container with numerical operations
►Csirf::ImageData
►Csirf::ISMRMRDImageData	Abstract Gadgetron image data container class
►Csirf::GadgetronImagesVector	A vector implementation of the abstract Gadgetron image data container class
Csirf::CoilImagesVector	A coil images container based on the GadgetronImagesVector class
Csirf::CoilSensitivitiesVector	A coil sensitivities container based on the GadgetronImagesVector class
►Csirf::NiftiImageData< dataType >
Csirf::NiftiImageData3D< dataType >	Forward declarations
►Csirf::NiftiImageData3DTensor< dataType >	Class for tensor SIRF image data
Csirf::NiftiImageData3DDeformation< dataType >	Class for deformation SIRF image data
Csirf::NiftiImageData3DDisplacement< dataType >	Class for displacement SIRF image data
Csirf::STIRImageData	STIR DiscretisedDensity<3, float> wrapper with added functionality
►Csirf::MRAcquisitionData	Abstract MR acquisition data container class
Csirf::AcquisitionsVector	A vector implementation of the abstract MR acquisition data container class
►Csirf::STIRAcquisitionData	STIR ProjData wrapper with added functionality
Csirf::STIRAcquisitionDataInFile	In-file implementation of STIRAcquisitionData
Csirf::STIRAcquisitionDataInMemory	In-memory implementation of STIRAcquisitionData
Csirf::STIRListmodeData
►CDataHandle	Basic wrapper for C++ objects
CObjectHandle< Base >
►Cstd::exception
CLocalisedException
Csirf::GadgetronClientException
CExecutionStatus	Execution status type
►Cstir::FBP2DReconstruction
Csirf::xSTIR_FBP2DReconstruction
►Csirf::FourierEncoding	Abstract class defining the interface to perform Fourier transforms
Csirf::CartesianFourierEncoding	Class to perform a cartesian FFT
Csirf::NonCartesian2DEncoding
Csirf::RPEFourierEncoding	Implementation to perform a non-cartesian FFT for RPE MR data
►Csirf::GadgetChain	Gadget chain class
►Csirf::AcquisitionsProcessor	A particular type of Gadget chain that has AcquisitionData on input and output
Csirf::RemoveOversamplingProcessor	Class for an xml-definition generator for oversampling removing chain
►Csirf::ImagesProcessor	A particular type of Gadget chain that has ImageData on input and output
Csirf::ExtractRealImagesProcessor	Class for an xml-definition generator for real image extracting chain
►Csirf::ImagesReconstructor	A particular type of Gadget chain that has AcquisitionData on input and ImageData on output
Csirf::SimpleGRAPPAReconstructionProcessor	Class for an xml-definition generator for simple undersampled GRAPPA reconstruction chain
Csirf::SimpleReconstructionProcessor	Class for an xml-definition generator for simple fully sampled reconstruction chain
Csirf::GadgetHandle	Shared pointer wrap-up for the abstract gadget class aGadget
Csirf::GadgetMessageConfigurationFile
Csirf::GadgetMessageIdentifier
Csirf::GadgetMessageScript
Csirf::GadgetronClientConnector	Class for communicating with Gadgetron server
►Csirf::GadgetronClientMessageReader	Abstract base class for receiving messages from Gadgetron server
Csirf::GadgetronClientAcquisitionMessageCollector	Class for accumulating acquisitions sent by Gadgetron server
Csirf::GadgetronClientBlobMessageReader
Csirf::GadgetronClientImageMessageCollector	Class for accumulating ISMRMRD images sent by Gadgetron server
►Cstir::GeneralisedObjectiveFunction
Csirf::xSTIR_GeneralisedObjectiveFunction3DF
►Cstir::GeneralisedPrior
Csirf::xSTIR_GeneralisedPrior3DF
Csirf::GeometricalInfo< num_physical_dimensions, num_index_dimensions >
►Csirf::GeometricalInfo< num_dimensions, num_dimensions >
Csirf::VoxelisedGeometricalInfo< num_dimensions >
Csirf::Gridder< D >	Class to perform a NUFFT for 2D data
Csirf::GTConnector	Shared pointer wrap-up for GadgetronClientConnector
Csirf::IgnoreMask	Class enabling ignoring acquisitions with certain ISMRMRD acquisition flags
Csirf::ImageDataWrap
Csirf::ImageWeightedMean< dataType >
Csirf::ImageWrap	Wrapper for ISMRMRD::Image
►Cstir::IterativeReconstruction
Csirf::xSTIR_IterativeReconstruction3DF
►Csirf::ImageData::Iterator
Csirf::GadgetronImagesVector::Iterator
Csirf::NiftiImageData< dataType >::Iterator
Csirf::STIRImageData::Iterator
Csirf::ImageWrap::Iterator
►Csirf::ImageData::Iterator_const
Csirf::GadgetronImagesVector::Iterator_const
Csirf::NiftiImageData< dataType >::Iterator_const
Csirf::STIRImageData::Iterator_const
Csirf::ImageWrap::Iterator_const
Csirf::JacobiCG< value_type >
►Cstir::KOSMAPOSLReconstruction
Csirf::xSTIR_KOSMAPOSLReconstruction3DF
Csirf::KSpaceSubset	Class to keep track of order in k-space
►Cstir::LmToProjData
Csirf::ListmodeToSinograms
►Cstir::LogcoshPrior
Csirf::xSTIR_LogcoshPrior3DF
Csirf::MRAcquisitionModel	A class for MR acquisition modelling
Csirf::Mutex
CNumberType
Csirf::Operator< Vector >
►Csirf::Operator< GadgetronImageData >
Csirf::MRAcquisitionModel::BFOperator	Class for the product of backward and forward projectors of the MR acquisition model
►Csirf::Operator< STIRImageData >
Csirf::PETAcquisitionModel::BFOperator	Class for the product of backward and forward projectors of a PET acquisition model
►Csirf::Operator< Wrapped_sptr< ImageData, dataType > >
Csirf::BFOperator< dataType >	Backward projection of the forward projected image
►Cstir::OSMAPOSLReconstruction
Csirf::xSTIR_OSMAPOSLReconstruction3DF
►Cstir::OSSPSReconstruction
Csirf::xSTIR_OSSPSReconstruction3DF
Csirf::Parser< Z >
►Csirf::ParserKeyBase< Z >	Base for parser keys
Csirf::ParserKey0Arg< Z >	Class for parser keys with 0 arguments
Csirf::ParserKey1Arg< Z, A >	Class for parser keys with 1 argument
Csirf::ParserKey2Arg< Z, A, B >	Class for parser keys with 2 arguments
►Csirf::PETAcquisitionModel	Class for a PET acquisition model
►Csirf::PETAcquisitionModelUsingMatrix	Ray tracing matrix implementation of the PET acquisition model
Csirf::PETAcquisitionModelUsingRayTracingMatrix
►Csirf::PETAcquisitionSensitivityModel	Listmode-to-sinograms converter
Csirf::PETAttenuationModel	Attenuation model
►Cstir::PLSPrior
Csirf::xSTIR_PLSPrior3DF
►Cstir::PoissonLogLikelihoodWithLinearModelForMeanAndListModeDataWithProjMatrixByBin
Csirf::xSTIR_PoissonLLhLinModMeanListDataProjMatBin3DF
►Cstir::PoissonLogLikelihoodWithLinearModelForMeanAndProjData
Csirf::xSTIR_PoissonLogLikelihoodWithLinearModelForMeanAndProjData3DF
►Cstir::ProjDataInterfile
Csirf::ProjDataFile	STIR ProjDataInterfile wrapper with additional file managing features
►Cstir::QuadraticPrior
Csirf::xSTIR_QuadraticPrior3DF
Csirf::Quaternion< dataType >	Class for quaternions
Creg_aladin_sym< dataType >
Creg_f3d< dataType >
►Csirf::Registration< dataType >	Base class for all SIRF registration
►Csirf::NiftiBasedRegistration< dataType >	Base class for all NIfTI-based registrations
►Csirf::NiftyRegistration< dataType >	Base class for all NiftyReg registrations
Csirf::NiftyAladinSym< dataType >	NiftyReg's aladin class for rigid and affine registrations
Csirf::NiftyF3dSym< dataType >	NiftyReg's f3d class for non-rigid registrations
Csirf::SPMRegistration< dataType >	Wrapper around SPM's registration class
►Cstir::RelativeDifferencePrior
Csirf::xSTIR_RelativeDifferencePrior3DF
►Csirf::Resampler< dataType >
Csirf::NiftyResampler< dataType >	Resampling class based on nifty resample
Csirf::NiftyResampler< dataType >	Resampling class based on nifty resample
►Cstir::ScatterEstimation
Csirf::PETScatterEstimator	Class for estimating the scatter contribution in PET projection data
►Cstir::SeparableGaussianImageFilter
Csirf::xSTIR_SeparableGaussianImageFilter
►Cstir::SingleScatterSimulation
Csirf::PETSingleScatterSimulator	Class for simulating the scatter contribution to PET data
Csirf::SIRFUtilities
►Csirf::TrajectoryPreparation< D >	Abstract class defining the interface to set trajectories
Csirf::GRPETrajectoryPrep	Class to set the golden-angle radial phase encoding (GRPE) trajectory
►Csirf::NonCartesian2DTrajPrep	Interface to set the 2D radial trajectory
Csirf::GoldenAngle2DTrajprep	Implementation to set anglular increment for 2D radial trajectory based on doi:10.1109/TMI.2006.885337
Csirf::Radial2DTrajprep	Implementation to set anglular increment for 2D radial trajectory based on (Pi=3.141...)/#Angles
►CNiftyMoMo::Transformation
CNiftyMoMo::BSplineTransformation
►Csirf::Transformation< dataType >	Forward declarations
Csirf::AffineTransformation< dataType >	Class for affine transformations
►Csirf::NonRigidTransformation< dataType >	Base class for non-rigid transformations
Csirf::NiftiImageData3DDeformation< dataType >	Class for deformation SIRF image data
Csirf::NiftiImageData3DDisplacement< dataType >	Class for displacement SIRF image data
Csirf::Wrapped_sptr< vector_type, value_type >
Csirf::xGadgetronUtilities