NiftyF3dSym.h

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/*
SyneRBI Synergistic Image Reconstruction Framework (SIRF)
Copyright 2017 - 2020 University College London
 
This is software developed for the Collaborative Computational
Project in Synergistic Reconstruction for Biomedical Imaging (formerly CCP PETMR)
(http://www.ccpsynerbi.ac.uk/).
 
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
 
*/
 
#pragma once
 
#include "sirf/Reg/NiftyRegistration.h"
 
template<class dataType> class reg_f3d;
 
namespace sirf {
 
template<class dataType> class AffineTransformation;
 
template<class dataType> class NiftyF3dSym : public NiftyRegistration<dataType>
{
public:
 
    NiftyF3dSym()
    {
        _floating_time_point  = 1;
        _reference_time_point = 1;
    }
 
    void process();
 
    void set_floating_time_point(const int floating_time_point) { _floating_time_point = floating_time_point; }
 
    void set_reference_time_point(const int reference_time_point) { _reference_time_point = reference_time_point; }
 
    void set_use_symmetric(const bool use_symmetric) { _use_symmetric = use_symmetric; }
 
    void set_initial_affine_transformation(const std::shared_ptr<const AffineTransformation<float> > mat) { _initial_transformation_sptr = mat; }
 
    virtual const std::shared_ptr<const Transformation<dataType> > get_deformation_field_inverse_sptr(const unsigned idx = 0) const;
 
    static void print_all_wrapped_methods();
 
protected:
 
    virtual void check_parameters() const;
 
    virtual void parse_parameter_file();
 
    void set_parameters();
 
    std::shared_ptr<reg_f3d<dataType> > _registration_sptr;
 
    int _floating_time_point;
    int _reference_time_point;
    bool _use_symmetric = false;
    std::shared_ptr<const AffineTransformation<float> > _initial_transformation_sptr;
};
}