NiftyAladinSym.h

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/*
SyneRBI Synergistic Image Reconstruction Framework (SIRF)
Copyright 2017 - 2019 University College London
 
This is software developed for the Collaborative Computational
Project in Synergistic Reconstruction for Biomedical Imaging (formerly CCP PETMR)
(http://www.ccpsynerbi.ac.uk/).
 
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
 
*/
 
#pragma once
 
#include "sirf/Reg/NiftyRegistration.h"
 
template<class dataType> class reg_aladin_sym;
 
namespace sirf {
 
template<class dataType> class AffineTransformation;
 
template<class dataType> class NiftyAladinSym : public NiftyRegistration<dataType>
{
public:
 
    void process();
 
    const std::shared_ptr<const AffineTransformation<float> > get_transformation_matrix_forward_sptr() const { return _TM_forward_sptr; }
 
    const std::shared_ptr<const AffineTransformation<float> > get_transformation_matrix_inverse_sptr() const { return _TM_inverse_sptr; }
 
    virtual const std::shared_ptr<const Transformation<dataType> > get_deformation_field_inverse_sptr(const unsigned idx = 0) const;
 
    static void print_all_wrapped_methods();
 
protected:
 
    virtual void parse_parameter_file();
 
    void set_parameters();
 
    std::shared_ptr<reg_aladin_sym<dataType> > _registration_sptr;
 
    std::shared_ptr<AffineTransformation<float> > _TM_forward_sptr;
    std::shared_ptr<AffineTransformation<float> > _TM_inverse_sptr;
};
}