GeometricalInfo.h

/*
  SyneRBI Synergistic Image Reconstruction Framework (SIRF)
  Copyright 2018 Commonwealth Scientific and Industrial Research Organisation's
  Australian eHealth Research Organisation
  Copyright 2020 Rutherford Appleton Laboratory STFC
  Copyright 2019 - 2020 University College London
 
  This is software developed for the Collaborative Computational
  Project in Synergistic Reconstruction for Biomedical Imaging (formerly CCP PETMR)
  (http://www.ccpsynerbi.ac.uk/).
 
  Licensed under the Apache License, Version 2.0 (the "License");
  you may not use this file except in compliance with the License.
  You may obtain a copy of the License at
  http://www.apache.org/licenses/LICENSE-2.0
  Unless required by applicable law or agreed to in writing, software
  distributed under the License is distributed on an "AS IS" BASIS,
  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
  See the License for the specific language governing permissions and
  limitations under the License.
*/
 
#ifndef SIRF_GEOMETRICAL_INFO_TYPE
#define SIRF_GEOMETRICAL_INFO_TYPE
 
#include <array>
#include <string>
 
namespace sirf {
 
template <int num_physical_dimensions, int num_index_dimensions>
class GeometricalInfo {
public:
    typedef std::array<float, num_physical_dimensions>     Coordinate;
    typedef std::array<unsigned int, num_index_dimensions> Index;
    // Eventually something here like
    // Coordinate transform_index_to_physical_point(Index)
    // Index transform_physical_point_to_index(Coordinate)
 
    virtual bool operator==(const GeometricalInfo& vgi) const = 0;
    virtual bool operator!=(const GeometricalInfo& vgi) const = 0;
    virtual void print_info() const = 0;
    virtual std::string get_info() const = 0;
};
 
 
template <int num_dimensions>
class VoxelisedGeometricalInfo :
    public GeometricalInfo<num_dimensions, num_dimensions> {
private:
    typedef GeometricalInfo<num_dimensions, num_dimensions> BaseType;
 
public:
    // TODO: Why to I have to define these again?
    typedef typename BaseType::Coordinate Coordinate;
    typedef typename BaseType::Index Index;
 
    typedef Coordinate Offset;
    typedef Coordinate Spacing;
    typedef Index Size;
    typedef std::array<Coordinate, num_dimensions> DirectionMatrix;
    typedef std::array<std::array<float, num_dimensions+1>, num_dimensions+1>
        TransformMatrix;
 
 
    VoxelisedGeometricalInfo(
        const Offset& _offset, const Spacing& _spacing,
        const Size& _size, const DirectionMatrix& _direction);
    virtual ~VoxelisedGeometricalInfo() {};
 
    virtual bool operator==(const GeometricalInfo<num_dimensions, num_dimensions>& gi) const
    {
        const VoxelisedGeometricalInfo& vgi = (const VoxelisedGeometricalInfo&)gi;
        const float eps = 0.01F;
        const float delta = 0.1F;
        return
            near_(_offset, vgi.get_offset(), eps) &&
            near_(_spacing, vgi.get_spacing(), eps) &&
            _size == vgi.get_size() &&
            near_(_direction, vgi.get_direction(), delta);
    }
    virtual bool operator!=(const GeometricalInfo<num_dimensions, num_dimensions>& gi) const
    {
        const VoxelisedGeometricalInfo& vgi = (const VoxelisedGeometricalInfo&)gi;
        return !(*this == vgi);
    }
    const Offset get_offset() const;
    const Spacing get_spacing() const;
    const Size get_size() const;
    const DirectionMatrix get_direction() const;
 
    const TransformMatrix calculate_index_to_physical_point_matrix() const;
 
    virtual void print_info() const;
    virtual std::string get_info() const;
 
private:
    Offset _offset;
    Spacing _spacing;
    Size _size;
    DirectionMatrix _direction;
    static bool near_(const Coordinate& x, const Coordinate& y, float eps)
    {
        float t = 0;
        for (int i = 0; i < num_dimensions; i++) {
            float xi = x[i];
            float yi = y[i];
            t = std::max(t, std::abs(xi - yi));
        }
        return t <= eps;
    }
    static bool near_(const DirectionMatrix& x, const DirectionMatrix& y, float eps)
    {
        float t = 0;
        for (int i = 0; i < num_dimensions; i++) {
            for (int j = 0; j < num_dimensions; j++) {
                float xij = x[i][j];
                float yij = y[i][j];
                t = std::max(t, std::abs(xij - yij));
            }
        }
        return t <= eps;
    }
};
 
typedef GeometricalInfo<3, 3> GeometricalInfo3D;
typedef VoxelisedGeometricalInfo<3> VoxelisedGeometricalInfo3D;
typedef VoxelisedGeometricalInfo<3>::TransformMatrix TransformMatrix3D;
 
}
 
#endif